Peer Reviewed Publications: (Ordered from New to Old)
Jiménez, N. P., Feldmann, M. J., Famula, R. A., Pincot, D. D., Bjornson, M., Cole, G. S., & Knapp, S. J. (2022). Harnessing underutilized gene bank diversity and genomic prediction of cross usefulness to enhance resistance to phytophthora cactorum in strawberry. The Plant Genome, 16(1). https://doi.org/10.1002/tpg2.20275
Qiao, Q., Edger, P. P., Xue, L., Qiong, L., Lu, J., Zhang, Y., Cao, Q., Yocca, A. E., Platts, A. E., Knapp, S. J., Van Montagu, M., Van de Peer, Y., Lei, J., & Zhang, T. (2021). Evolutionary history and pan-genome dynamics of Strawberry (fragaria spp..). Proceedings of the National Academy of Sciences, 118(45). https://doi.org/10.1073/pnas.2105431118
Castillejo, C., Waurich, V., Wagner, H., Ramos, R., Oiza, N., Muñoz, P., Triviño, J. C., Caruana, J., Liu, Z., Cobo, N., Hardigan, M. A., Knapp, S. J., Vallarino, J. G., Osorio, S., Martín-Pizarro, C., Posé, D., Toivainen, T., Hytönen, T., Oh, Y., … Amaya, I. (2020). Allelic variation of MYB10 is the major force controlling natural variation in skin and flesh color in strawberry (fragaria spp.) fruit. The Plant Cell, 32(12), 3723–3749. https://doi.org/10.1105/tpc.20.00474
Whitaker, V. M., Knapp, S. J., Hardigan, M. A., Edger, P. P., Slovin, J. P., Bassil, N. V., Hytönen, T., Mackenzie, K. K., Lee, S., Jung, S., Main, D., Barbey, C. R., & Verma, S. (2020). A roadmap for research in Octoploid strawberry. Horticulture Research, 7(1). https://doi.org/10.1038/s41438-020-0252-1
Edger, P. P., Poorten, T. J., VanBuren, R., Hardigan, M. A., Colle, M., McKain, M. R., Smith, R. D., Teresi, S. J., Nelson, A. D., Wai, C. M., Alger, E. I., Bird, K. A., Yocca, A. E., Pumplin, N., Ou, S., Ben-Zvi, G., Brodt, A., Baruch, K., Swale, T., … Knapp, S. J. (2019). Origin and evolution of the octoploid Strawberry Genome. Nature Genetics, 51(3), 541–547. https://doi.org/10.1038/s41588-019-0356-4
Edger, P. P., VanBuren, R., Colle, M., Poorten, T. J., Wai, C. M., Niederhuth, C. E., Alger, E. I., Ou, S., Acharya, C. B., Wang, J., Callow, P., McKain, M. R., Shi, J., Collier, C., Xiong, Z., Mower, J. P., Slovin, J. P., Hytönen, T., Jiang, N., … Knapp, S. J. (2017). Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria Vesca) with chromosome-scale contiguity. GigaScience, 7(2). https://doi.org/10.1093/gigascience/gix124
Pincot, D. D., Feldmann, M. J., Hardigan, M. A., (2022). Novel fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes. Theoretical and Applied Genetics, 135(6), 2121–2145. https://doi.org/10.1007/s00122-022-04102-2
Fan, Z., Tieman, D. M., Knapp, S. J., Zerbe, P., Famula, R., Barbey, C. R., Folta, K. M., Amadeu, R. R., Lee, M., Oh, Y., Lee, S., & Whitaker, V. M. (2022). A multi‐omics framework reveals Strawberry Flavor Genes and their regulatory elements. New Phytologist, 236(3), 1089–1107. https://doi.org/10.1111/nph.18416
Jiménez, N. P., Feldmann, M. J., Famula, R. A., Pincot, D. D., Bjornson, M., Cole, G. S., & Knapp, S. J. (2022). Harnessing underutilized gene bank diversity and genomic prediction of cross usefulness to enhance resistance to phytophthora cactorum in strawberry. The Plant Genome, 16(1). https://doi.org/10.1002/tpg2.20275
Feldmann, M. J., & Tabb, A. (2022). Cost‐effective, high‐throughput phenotyping system for 3D reconstruction of fruit form. The Plant Phenome Journal, 5(1), e20029. https://doi.org/10.1002/ppj2.20029
Feldmann, M. J., Piepho, H. P., & Knapp, S. J. (2022). Average semivariance directly yields accurate estimates of the genomic variance in complex trait analyses. G3, 12(6), jkac080. https://doi.org/10.1093/g3journal/jkac080
Pincot, D. D. A., Feldmann, M. J., Hardigan, M. A., Vachev, M. V., Henry, P. M., Gordon, T. R., ... & Knapp, S. J. (2022). Novel Fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes. Theoretical and Applied Genetics, 135,2121–2145. https://doi.org/10.1007/s00122-022-04102-2
Petrasch, S., Mesquida-Pesci, S. D., Pincot, D. D. A., Feldmann, M. J., López, C. M., Famula, R., Hardigan, M. A., Cole, G. S., Knapp, S. J., & Blanco-Ulate, B. (2021). Genomic Prediction of Strawberry Resistance to Postharvest Fruit Decay Caused by the Fungal Pathogen Botrytis Cinerea. https://doi.org/10.1101/2021.06.08.447540
Feldmann, M. J., Piepho, H. P., Bridges, W. C., & Knapp, S. J. (2021). Average semivariance yields accurate estimates of the fraction of marker-associated genetic variance and heritability in complex trait analyses. PLoS genetics, 17(8), e1009762. https://doi.org/10.1371/journal.pgen.1009762
Feldmann, M. J., Gage, J. L., Turner‐Hissong, S. D., & Ubbens, J. R. (2021). Images carried before the fire: The power, promise, and responsibility of latent phenotyping in plants. The Plant Phenome Journal, 4(1), e20023. https://doi.org/10.1002/ppj2.20023
Hardigan, M. A., Lorant, A., Pincot, D. D., Feldmann, M. J., Famula, R. A., Acharya, C. B., ... & Knapp, S. J. (2021). Unraveling the complex hybrid ancestry and domestication history of cultivated strawberry. Molecular Biology and Evolution, 38(6), 2285-2305. https://doi.org/10.1093/molbev/msab024
Henry, P. M., Pincot, D. D., Jenner, B. N., Borrero, C., Aviles, M., Nam, M. H., ... & Gordon, T. R. (2021). Horizontal chromosome transfer and independent evolution drive diversification in Fusarium oxysporum f. sp. fragariae. New Phytologist, 230(1), 327-340. https://doi.org/10.1111/nph.17141
Petrasch, S., Mesquida-Pesci, S. D., Pincot, D. D., Feldmann, M. J., López, C. M., Famula, R., ... & Blanco-Ulate, B. (2021). Genomic prediction of strawberry resistance to postharvest fruit decay caused by the fungal pathogen Botrytis cinerea. G3, 12(1), jkab378. https://doi.org/10.1093/g3journal/jkab378
Pincot, D. D. A., Ledda, M., Feldmann, M. J., Hardigan, M. A., Poorten, T. J., Runcie, D. E., ... & Knapp, S. J. (2021). Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars. G3, 11(3), jkab015. https://doi.org/10.1093/g3journal/jkab015
Pincot, D. D. A., Hardigan, M. A., Cole, G. S., Famula, R. A., Henry, P. M., Gordon, T. R., & Knapp, S. J. (2020). Accuracy of genomic selection and long‐term genetic gain for resistance to Verticillium wilt in strawberry. The Plant Genome, 13(3), e20054. https://doi.org/10.1002/tpg2.20054
Hardigan, M. A., Feldmann, M. J., Lorant, A., Famula, R., Acharya, C., Cole, G., ... & Knapp, S. J. (2019). Chromosome evolution of octoploid strawberry. bioRxiv, 861526. https://doi.org/10.1101/861526
Petrasch, S., Silva, C. J., Mesquida-Pesci, S. D., Gallegos, K., Van Den Abeele, C., Papin, V., ... & Blanco-Ulate, B. (2019). Infection strategies deployed by Botrytis cinerea, Fusarium acuminatum, and Rhizopus stolonifer as a function of tomato fruit ripening stage. Frontiers in Plant Science, 10, 223. https://doi.org/10.3389/fpls.2019.00223
Petrasch, S., Knapp, S. J., Van Kan, J. A., & Blanco‐Ulate, B. (2019). Grey mould of strawberry, a devastating disease caused by the ubiquitous necrotrophic fungal pathogen Botrytis cinerea. Molecular Plant Pathology, 20(6), 877-892. https://doi.org/10.1111/mpp.12794
Hardigan, M. A., Poorten, T. J., Acharya, C. B., Cole, G. S., Hummer, K. E., Bassil, N., ... & Knapp, S. J. (2018). Domestication of temperate and coastal hybrids with distinct ancestral gene selection in octoploid strawberry. The plant genome, 11(3), 180049. https://doi.org/10.3835/plantgenome2018.07.0049
Pincot, D. D. A., Poorten, T. J., Hardigan, M. A., Harshman, J. M., Acharya, C. B., Cole, G. S., ... & Knapp, S. J. (2018). Genome-wide association mapping uncovers Fw1, a dominant gene conferring resistance to Fusarium wilt in strawberry. G3: Genes, Genomes, Genetics, 8(5), 1817-1828. https://doi.org/10.1534/g3.118.200129
